Stargate SG-1 and Atlantis are probably my favorite shows. Not so much Universe though.
Well, and others I like you already mentioned in the OP so.
I'm a bit dissappointed with the plot twists in Fringe, I think the series was off to a great start, but it's not going the right way now in my opinion. (The characters just stay the same-ish with the only things that change is the fact they're not the same characters. There's just not much dynamics going on with the show.)